Model year record
2006 Yamaha FJR1300AE recalls & problems
The 2006 Yamaha FJR1300AE has no safety recalls on file with NHTSA, and 16 owner complaints. The most-reported problem area is electrical system (13 complaints).
Safety recalls
No safety recalls have been filed for the 2006 Yamaha FJR1300AE.
Recall repairs are free at any authorised dealer. A recall listed here may already have been fixed on a particular car: enter its 17-character VIN at nhtsa.gov/recalls to see open recalls.
What owners report
| Problem area | Complaints | Typical mileage* |
|---|---|---|
| Electrical systemIgnition | 13 | 16,500 mi |
| Engine and engine coolingEngine | 2 | — |
| Power train | 1 | — |
*Median odometer reading when the problem happened, where owners gave one. One complaint can name several problem areas.
Recent owner complaints
- Power train
I WAS WEST BOUND ON I80 ON MY YAMAHA FJR1300AE 2006 MOTORCYCLE ABOUT 10 MILES WEST OF JOLIET, IL. A WARNING LIGHT CAME ON "SHIFT SH46" AS I CONTINUED RIDING I ATTEMPTED TO SHIFT GEARS WITH THE PADDLE SHIFTER (ELECTRIC SHIFT). THE TRANSMISSION WOULD NOT SHIFT. I ATTEMPTED TO DOWN SHIFT USING THE FOOT OPERATED MANUAL SHIFT WITH THE SAME RESULTS. THE TRANSMISSION WAS LOCKED IN 5TH GEAR. I PULLED OFF AN EXIT RAMP AT OTTAWA, IL AND THE ENGINE STOPPED OPERATING (STALLED). I TURNED OFF THE IGNITION AND MANUALLY PUT THE TRANSMISSION IN NEUTRAL. AFTER A COUPLE OF MINUTES I RESTARTED THE FJR1300AE MOTORCYCLE, AND CONTINUED TO MY DESTINATION. THE SAME INSTANCE OCCURRED ON 10/01/2018 ON I80 DURING THE…
- Electrical system
THE MOTORCYCLE'S ENGINE QUIT SUDDENLY WITHOUT WARNING. FROM THE ON-LINE FJR FORUM AND MY PERSONAL INSPECTIONS OF ELECTRICAL COMPONENTS IN MY BIKE, I HAVE DETERMINED THAT THIS WAS CAUSED BY THE WELL KNOWN YAMAHA FJR 1300 ELECTRICAL GROUNDING ISSUE. A RECALL BY YAMAHA IS NEEDED. THIS HAS BEEN A KNOWN FJR ISSUE FOR THREE YEARS.
- Engine and engine cooling › Engine
YAMAHA FJR AE 2006. I PURCHASED THIS BIKE IN 2010 WITH ONLY 3500 MILES ON IT. RIDING WITH FRIENDS WE WERE ABOUT TO ENTER A MAJOR INTERSTATE HIGHWAY IN DALLAS, TX. UPON GIVING THE BIKE THROTTLE THE ENGINE SUDDENLY LOST ALL POWER AT ABOUT 50 MILES PER HOUR. THE SPEEDOMETER AND TACHOMETER WERE JUMPING FROM ZERO TO MAXIMUM SEVERAL TIMES. I ALMOST LOST CONTROL AND OTHER BEHIND ME ALMOST CRASHED INTO ME FROM BEHIND. AS I BEGAN TO PULL OFF THE RAMP OUT OF THE WAY OF OTHER TRAFFIC SUDDENLY THE BIKE RESTARTED AND REGAINED POWER. IT HAS NOT DONE THIS AGAIN. WHEN I TOOK THE BIKE TO THE LOCAL YAMAHA DEALER THEY TOLD ME THERE WERE NO ACTIVE RECALLS ON THIS MODEL. NOW I FIND THAT INDEED THE IGNITION…
- Electrical system
2006 YAMAHA FJR1300. VEHICLE WAS BEING RIDDING AND THE SPEEDOMETER STOPPED WORKING, ABS AND CHECK ENGINE LIGHTS STARTED FLASHING AND THE GEAR INDICATOR WAS ALSO FLASHING. THIS IS THE AE MODEL WITH ELECTRICAL SHIFTING. IT WAS STUCK IN 5TH GEAR AND WOULD NOT DOWN SHIFT. I WAS ABLE TO RETURN IT TO THE PARKING LOT IN HIGH GEAR AND TURN OFF THE MOTOR. CALLED DEALER AND HE CLEANED A CORRODED GROUND SPIDER AND VEHICLE IS NOW OPERATING PROPERLY AGAIN. *TR
- Electrical system
THERE WERE NO MEMORABLE EVENTS LEADING UP TO THE FAILURE. THERE ARE NO MODIFICATIONS TO THE MOTOR, ELECTRICAL, OR IGNITION SYSTEMS. ALL SYSTEMS REMAIN STOCK FROM THE DEALER/MANUFACTURER. THE MOTOR WAS CUTTING IN AND OUT LIKE THERE WAS AN ELECTRICAL INTERRUPTION. AT THE SAME TIME THAT THE MOTOR WAS CUTTING IN AND OUT, THE TURN SIGNALS AND HIGH BEAMS INDICATOR WOULD TURN ON FOR AS LONG AS THE MOTOR WAS CUTTING IN AND OUT, WHICH WAS VERY FAST (EXAMPLE: .5 SECOND). THIS CONDITION CONTINUED FOR 3 MONTHS WITH NO REGULARITY. THE COMPLETE FAILURE FINALLY OCCURRED WHILE TRAVELING HOME FROM WORK ON THE FREEWAY. I WAS ABLE TO SAFELY GET TO THE SIDE OF THE ROAD, BUT WAS UNABLE TO GET THE MOTOR STARTED.…
- Electrical system
2006 YAMAHA FJR1300AE WITH 20,000 MILES. LEFT ME STRANDED WHEN IT SUDDENLY WOULD NOT START. SYMPTOMS INCLUDED: 1.THE FUEL GAUGE BAR DISPLAY SHOWS A FULL TANK AND THE WHOLE BAR DISPLAY IS BLINKING ON AND OFF. 2. HORN WON'T WORK 3. THE HEADLIGHT HIGH BEAM INDICATOR IS ON, ALTHOUGH THE HEADLIGHT IS NOT ON AND SWITCH IS IN THE LOW POSITION 4. BOTH TURN SIGNAL INDICATORS ARE STEADY ON 5. NO ERROR CODES 6. NEUTRAL INDICATOR IS ON THIS IS A MOTORCYCLE WITHA COMPUTERIZED CLUTCH - SO NO MANUAL SHIFT. WHEN IT IS DEAD THERE IS NO MOVING IT. TOWED TO MY MECHANIC WHO DISCOVERED A MELTED GROUND JUNCTION IN THE MAIN ELECTRICAL HARNESS UNDER THE FUEL TANK. REPLACED BOTH UPPER AND LOWER HARNESSES AT A COST…
- Electrical system
THIS IS ON A 2006 YAMAHA FJR1300AE MODEL MOTORCYCLE WITH ABOUT 26K MILES ON IT. I STARTED THE MOTORCYCLE, IT RAN FOR ABOUT 1 TO 2 SECONDS THEN SHUTDOWN AND WOULD NOT RESTART. THIS WAS THE FIRST AND ONLY OCCURRENCE. UPON INSPECTION BY AN AUTHORIZED DEALERSHIP SERVICE TECHNICIAN IT WAS FOUND TO HAVE AN OVERHEATED, MELTED GROUND JUNCTION IN THE MAIN ELECTRICAL HARNESS. THE MANUFACTURER IS GOING TO REPLACE THE ENTIRE MAIN HARNESS UNDER THE EXTENDED WARRANTY I HAVE. THE OLD HARNESS IS BEING SENT BACK TO THE OEM FOR INSPECTION. IT IS MY UNDERSTANDING FROM MONITORING CERTAIN INTERNET FORUMS FOR THIS MACHINE THAT OTHER OWNERS ARE HAVING IDENTICAL FAILURES. INASMUCH AS THIS DEFECT CAN CAUSE THE…
- Electrical system
2006 YAMAHA FJR 1300 AE MOTORCYCLE. *TR
Owner complaints are submitted to NHTSA by the public and are not verified. Shown as filed (NHTSA removes personal details); long reports are shortened.
NHTSA defect investigations
- MOTORCYCLE STALLING - ELECTRICALClosedLed to recall 09V002000
ODI IS AWARE OF AT LEAST 45 ALLEGATIONS OF FJR1300 ENGINE STALLING WHILE UNDERWAY DUE TO AN IGNITION SWITCH FAILURE.IN SOME INSTANCES, CYCLING THE SWITCH WILL ALLOW RE-START.FJRFORUM.COM HAS NUMEROUS THREADS ALLEGING THE SAME ISSUE.SHORTLY AFTER OPENING THIS EA, AND BEFORE RECEIVING A RELATED INFORMATION REQUEST FROM US, YAMAHA DECIDED TO CONDUCT A SAFETY RECALL (09V-002) TO INSTALL NEW IGNITION SWITCHES IN ALL MY 2006-8 AND EARLY MY 2009 FJR1300 MOTORCYCLES.WITH THAT DECISION, THIS INVESTIGATION IS CLOSED.
- MOTORCYCLE STALLING - ELECTRICALClosed
ODI IS AWARE OF AT LEAST 45 ALLEGATIONS OF FJR1300 ENGINE STALLING WHILE UNDERWAY DUE TO AN IGNITION SWITCH FAILURE.IN SOME INSTANCES, CYCLING THE SWITCH WILL ALLOW RE-START.FJRFORUM.COM HAS NUMEROUS THREADS ALLEGING THE SAME ISSUE.TO GATHER MORE FOCUSED INFORMATION ABOUT THIS SUBJECT, WE ARE UPGRADING THIS PE TO AN EA (EA08-025).